An RA-backed startup ‘ATACs’ a novel challenge, looking to spur protein degradation outside the cell

Pro­tein degra­da­tion is one of the hot drug class­es of the fu­ture, but com­peti­tors are pil­ing in with the likes of C4, Arv­inas, Fron­tier Med­i­cines and Vi­vid­ion jostling for po­si­tion. A new start­up wants to ap­ply the lessons learned from degra­da­tion out­side the cell, and it now has the green­light from RA Cap­i­tal to steam ahead.

Avi­lar Ther­a­peu­tics launched Thurs­day with $60 mil­lion from found­ing in­vestor RA to chase a nov­el pro­tein degra­da­tion drug class the start­up is call­ing AT­ACs— short for ‘AS­G­PR Tar­get­ing Chimeras’ — that looks to trash un­want­ed pro­teins cir­cu­lat­ing out­side the hu­man cell.

AT­ACs are the next in a line of acronymed degra­da­tion drugs, fol­low­ing the likes of PRO­TAC, LYTEC, AT­TEC and more. The big dif­fer­ence here is that Avi­lar’s plat­form looks to spur on pro­tein degra­da­tion in the ex­tra­cel­lu­lar en­vi­ron­ment, drag­ging tar­get­ed pro­teins to dis­pos­al sites on liv­er cells.

The idea be­hind AT­ACs start­ed from a sim­ple ques­tion in the halls at RA, CEO Dan Grau told End­points News: Pro­tein de­graders are great and grow­ing in­creas­ing­ly val­i­dat­ed in an­i­mals and hu­mans, but can we use the same mech­a­nism out­side the cell? That in­quiry led the Avi­lar team to the AS­G­PR re­cep­tor on the sur­faces of he­pa­to­cytes, a key tran­sit point for liv­er cells’ break­ing down en­doge­nous pro­teins.

By lever­ag­ing the liv­er’s nat­ur­al process­es, the team en­vi­sioned a drug class that could latch a vast range of pro­teins on­to those AS­G­PR re­cep­tors and kick­start degra­da­tion in the lyso­some. Such a drug, com­prised of one lig­and used to bind to a tar­get pro­tein and an­oth­er to bind to AS­G­PR, would act as an Uber to the shred­der for un­want­ed pro­teins in the blood, a mech­a­nism that could have a broad range of ap­pli­ca­tions across ther­a­peu­tic ar­eas.

‘What was im­por­tant ear­ly on was the iden­ti­fi­ca­tion ear­ly on of an op­por­tu­ni­ty to de­sign small mol­e­cule lig­ands to AS­G­PR that could per­form bet­ter than his­tor­i­cal chemistries or per­form bet­ter than the way na­ture is do­ing it it­self,’ Grau said. ‘The way we like to think about it is on the one hand we’re har­ness­ing a nat­ur­al process while al­so im­prov­ing on na­ture it­self.’

The prob­lem, Grau said, is that there was a lot of bi­o­log­i­cal and chem­i­cal ground­work still un­known be­tween con­ceiv­ing of such a project and re­al­iz­ing it. The idea be­hind AT­AC came up in ear­ly 2020 and was mov­ing quick­ly, but Grau, who came on board in May, said the com­pa­ny most­ly had to start from scratch to build its tech plat­form while al­so run­ning at full speed. First, the team dove in­to the chem­istry of high-affin­i­ty AS­G­PR bind­ing, cre­at­ing a li­brary of lig­ands it could use to ef­fec­tive­ly bind to that re­cep­tor. Then, Avi­lar turned its at­ten­tion to de­vel­op­ing a mod­u­lar plat­form for AT­ACs — ef­fec­tive­ly swap­ping out lig­ands with dif­fer­ent binders to tar­get a wider range of pro­teins — and cre­at­ing math­e­mat­i­cal mod­els to best pre­dict the PK and PD ef­fects of the drugs.

Fi­nal­ly, and per­haps most promis­ing giv­en the wide range of po­ten­tial ther­a­peu­tic ap­pli­ca­tions for a plat­form like this, Avi­lar cre­at­ed a pro­teome map­ping sys­tem that would give it a grow­ing un­der­stand­ing of how ex­tra­cel­lu­lar pro­teins func­tion and how the body’s nat­ur­al degra­da­tion process works; a guide­post, if you will, for the path to clin­i­cal de­vel­op­ment.

Now, with its tech ready for show­time, Avi­lar is work­ing on con­struct­ing a pipeline as Grau looks to build a team of ex­perts around him. He took the first shot this week, hir­ing on Effie Toz­zo, a vet­er­an of Mer­ck, Roche and Astel­las, as the com­pa­ny’s first CSO.

On the pipeline front, Grau was mum, but he did say the first pro­gram would be close­ly watched as it could po­ten­tial­ly of­fer proof-of-mech­a­nism for the com­pa­ny’s en­tire plat­form.

‘When we go in­to our first clin­i­cal tri­al … in that con­text, we will be mea­sur­ing the lev­els of pro­tein we wish to de­grade and will be able to show the lev­els of degra­da­tion of that pro­tein,’ Grau said. ‘This pro­vides a very ear­ly proof of mech­a­nism and an ac­cel­er­a­tion of val­ue, but what’s nice is that it’s go­ing to be true for every AT­AC pro­gram.’

So, with no dead­line set, it’s all eyes on that first hu­man study. But there may be even more in the works over at Avi­lar: Grau not­ed the com­pa­ny is work­ing on ‘ad­di­tion­al tech­nolo­gies’ in ex­tra­cel­lu­lar degra­da­tion that could add even more meat on the bone here.

Stay tuned.
https://endpts.com/an-ra-backed-startup-atacs-a-novel-challenge-looking-to-spur-protein-degradation-outside-the-cell/